Scaffold Ga0209088_10000250

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000250
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39317
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (74.58%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003112	Metagenome / Metatranscriptome	506	N
F004010	Metagenome / Metatranscriptome	457	Y
F012569	Metagenome / Metatranscriptome	279	N
F039527	Metagenome / Metatranscriptome	163	N
F056556	Metagenome	137	N
F068578	Metagenome / Metatranscriptome	124	N
F078641	Metagenome / Metatranscriptome	116	N
F083891	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000025015	F068578	AGGAGG	MADSTQSIMEAIDSLGTAVRELQEGLPVREHTEPTIEDVATHASTVIRKIMSRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNTSSPDGSGETCIDHLERALVRAVFTLYKAKEGKIH
Ga0209088_1000025018	F056556	AGGAGG	MKRQIVTVSCQLPEWFEKHSLPRMEESSKRWDANLVVIKPENPIGLLAKMSLVDAVQNSDRTLFVDSDVLISRECVNPFETFPHGHFYACADAPHGDQLHWGRANEMILSQAMLGSVKWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSIRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP
Ga0209088_100002502	F002149	AGAAG	MTAIEYIEASGVPEGMWHNLADWFRWFERQGMVGIVEDSDGIAGVALARCLKEGQKPDHYVHSEDGDNVFVDLTVSSKGAISLRCLLLLLWERFGIRKRITFNRSGKPRSYDYMTFMRKAFIGSKL
Ga0209088_1000025024	F004010	AGGA	MPLGKNVSKNMRELIKDNKKKGKERGAGGKARSFEQMVAIALRSAGKSKNR
Ga0209088_1000025031	F039527	GGA	MHRVYVENVLEETMNYYDDKEEGALTFEQIVPGKYYRYNRDYGICEIMESASNKPKILRYLNRDGGLLGGNGDLFEIDMTDRLLEVLKERRDKTIGFIDEMGTW
Ga0209088_1000025033	F083891	AGG	MGDTKLERMERMEGRMSKSIECPNCRCEVPVALFTSRIGRVRSEAKAKASIANGKKGGAPKGNRNWAGKELPVVGFSAQN
Ga0209088_1000025046	F012569	N/A	MSADTDRFGARNGFTVGTASVAGSGYWAIQMLADTTFSAISGNYDGTLTGITIGSGNIIYGEFNSFTAGTGRVIAYKG
Ga0209088_1000025050	F003112	N/A	MKRIATWITVLGLRLLLTAKDYACFKEALKCAEDNNRLARGTKYIGAVKHLLSVNRSIKRMVDDGRDRDEVVGAVVHLAVSLKYLESRNE
Ga0209088_1000025051	F078641	GGAG	MSEDQVWGIEVKLARMEERQVQLYQMVETSLSNYADVVNRVSALEHLRSRIFAIAGVAGLLFSVAWDLVKNRMNH
Ga0209088_1000025058	F000635	GAGG	MTLTEIAQYAGEKIGKTDSDTLNFLQKSASLNYRRVWNFAPWRESITNSTYSVSTGTRTVSLGSLVENPLSVAYGDSELMSVDLQTIVSQDADLLDSDRTGTPSQYYFKGRNTSGTAEIDLYPLLNTTSTTTLKVIEKVTCITRQNNIVDFPPSSAAITDELRLPHVQHVVLALTHADALERERQYAKAQAVVSSANADLAQMAQYEMSQVGGIKVITPSSLGEYSITDIGV