Scaffold Ga0209088_10000236

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000236
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40158
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (84.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060589	Metagenome	132	Y
F067363	Metagenome	125	Y
F093219	Metagenome / Metatranscriptome	106	Y
F096876	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000023638	F067363	N/A	MKIKKFDQALHDKYDPPARKAVSDWIQMKWGLQAIDNPDIYGTDLIIYRNGNPVGSAEVEVRQWSPVCPFYTIHVPVRKVEMLEVPNTLFFALTHDMSHAYLIRGNEALKYNQVEMQDATKHEFYYDVPKHLFKYIDLTQPF
Ga0209088_1000023641	F060589	N/A	MDEQKHKHRCAVRQLIMWRRIWGLKVFREYMHKHKLDWKLVRDFEDQWVKGNRADEKGEW
Ga0209088_1000023648	F093219	GGA	MMNNKPVAWTACLSCGQKVTSDSIHTCSPQLKTLTDEEIEKVFVLNCNLINETFAYRDFARAILRKAQEK
Ga0209088_100002367	F096876	N/A	MSDQIERIAVLEAEVEKLQASQKEILDCIHAVRDEMMRYKGFLGGVAFLASGIGIFLTLFKDWIFKHFA