Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000189 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10000189 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46073
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (91.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

46073

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (91.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F028486	Metagenome	191	Y
F061792	Metagenome	131	Y
F093754	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000018914	F093754	AGGAG	MGKVKNTVTLTATEAALAKKLGISAQVYAQAMGQAQAMGQQHVTMTEFNPNNDPVYSIPLSELVNLWRARYGDTWVDVSEIEEDFWSDASARLHTNKKMEELNHHSDNSPWARLKEDA
Ga0209088_1000018919	F002653	AGAAG	MMSQEELEHRVMKMSDEEQAHFKLLIHKLVMCYGEGKAQAVVIVGRAEDAVAGVVTLNCDEMEASQLMLAANDFFGFLNVLGAPPKENFN
Ga0209088_1000018929	F061792	AGGAG	MAYVCKNYDEAVGTFAMRGAVRSIKWQPNERPLDPKPVAHHRLIEGSNEYGKYFDVKLYQTIMARFYEPKVEDGKRVERRLYMGHSSQTSKQFMYYTLRVDVGANRQRDSDDMYSDESIIMPIYTEHFMKDEGVPFSLDSYWVDGVLDPTRSRHTPHYRLVADTDVRKYKAKVAAHFEPYIMLAQMRMPEFKASCDINYRLGQKFGGEGFNRAYYMAIQEMWTDPEPRQGDIDVFFAMCQKAYDIIASKRGMQQADFQVGGSWYSRQNGNQNSTVDELAKPIETTEFRRAILDRIHKYVGSNTMKKPEEVKQFPKHSEYPRSNIHT
Ga0209088_1000018930	F028486	GGAG	MGYRSDVAYIIKFNDIETRDNFVTLMLAKNEPQITQAINECEYGYKDDPIITFNETDLKWYDSFEDVKAHHNLMKYAVEIYQHKGGRYRFISVGEDGAEQFDEDDNENDLYDYITTVHAIETSFPRIPTGESTVTTTQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000189

Overview

Ecosystem & Geography

Associated Families

Sequences