Scaffold Ga0209088_10000168

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000168
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48495
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (92.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F006110	Metagenome	381	Y
F034467	Metagenome	174	Y
F074390	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000016810	F074390	AGGA	MELTKVAQAINATQADLAKQSGELFAQSEIDAGQALELFAKSVGTEPTYEEWNSCRIEFINAYVRTKPQAKGNSADQAFKRFRGRLVDAYGLEAPKAQTEAALKKAEERKAKQDALEARYADTSTRVLKDLLSNEYQAQAKNPTKKSAILKELEKAVSLRVKQEAEGQREELKAVRDELIAWIRTCNDLDRLALAHEMMNPDYDVQAETVTD
Ga0209088_1000016823	F034467	GAG	MEQLKYLSKAMPLRLCTDPKFKYRNASQTDVRRTWRKARLLMLLTKGVAYESRT
Ga0209088_1000016829	F006110	AGGAG	MPRPKPPEPLIGRQVRMSDRHWIIFNQLGGAEWLRQMIVKKTPMPKKYYDDLLKEKEGAK
Ga0209088_1000016852	F000332	GGAG	MRWLVLLLLVLGLVGAVAKSGCHVREFYGIAYTVHDPTIRHREMMAWLDKNAPYCKSTEYMVIWNNLAEWAGAADSTWLRAKVVHGYKDALEREKK