Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000145 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10000145 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52388
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (91.30%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

52388

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (91.30%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F001061	Metagenome / Metatranscriptome	789	Y
F007519	Metagenome / Metatranscriptome	349	Y
F014358	Metagenome	263	Y
F034071	Metagenome / Metatranscriptome	175	N
F034467	Metagenome	174	Y
F100689	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000014523	F000340	AGG	MNWADVLKAVIPIIVASLAWLLGQVNDFSTRLTRIEGAMPALITKEGIPTDSPISADRRAIMKEQLMNHINELQVKVRLLEEREKMGRK
Ga0209088_1000014527	F001061	AGG	MAELNAIPPSLPLAPEEYESRYFSQLNNILRLYFNQLNNPGDMGGATLNLNLETLPTEADLPTLRLGDVYRDTQDGVQATSQMLRIKTST
Ga0209088_1000014555	F007519	AGGGGG	MSGIENLKLEKQRKGRGLGKKAALACTSLRLPEHVMNYFNTNFAYTKQAKMREILTEYVNNQTGVKL
Ga0209088_1000014556	F034467	AGGAG	MEEIKYKSKVMPLRKCTDPKFKWYSPSNTDIRKTWRKARLLIRITKGAAYVRN
Ga0209088_1000014562	F100689	GAGG	MLARYYVTGWSNRRGSWIAEVVEAQSKAVAKLRFGLTYPTLKTVKTYRLKGGG
Ga0209088_1000014568	F014358	AGG	MTQKDWKFCTDCGDELHVSRHQAFCKFCERDRDATAKTARMSWCVVQEYGKGPYQLVTPTSAPTTLKQTNQKELRS
Ga0209088_1000014569	F034071	GAGG	MTNVITTQSTTIDTGILDIMRDALVGGVVSTGELIENYSNAIASVFDRKDINGNIIAKWFDLKGKEYKGVKAECVKFRNAMMDKDAKFIKSINADGTRVHTATLDTYWQRVKVASGYVPKGNTVTGTVDVDTKTAAELKTMINRILKSEEDGQECHASTILETLESAYIVLTGQAHDADK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000145

Overview

Ecosystem & Geography

Associated Families

Sequences