Scaffold Ga0209088_10000099

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000099
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62714
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (85.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026544	Metagenome / Metatranscriptome	197	Y
F030062	Metagenome / Metatranscriptome	186	Y
F050890	Metagenome	144	Y
F076851	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_10000099102	F026544	AGG	MRKVSIRTVENTIGLARSVANGTTKFPFMGYCADLMQKMLEEIKQARKAQEK
Ga0209088_10000099104	F030062	AGGA	MIVTILNMFALFVATCAVLIFAVVFAFFLFIMYACIHIGWGEIKGMSLSDLWNRIQK
Ga0209088_100000996	F076851	AGG	MSFFDSLIDTPTYQSQIMSRPAGAPQTALPQQPMPQMPAQGMAKGGLTAANENIKQIQIMKVISNYFKNKGLPVEPAMAGVQKEIENGLQLIPFESSVMGFKPLGKDTAQIHFFTVGTMKDLANDMQYFYKYLKNKGITTVYDSIPAPITIQMFQQLGAKVMRSDDPKYKFKATI
Ga0209088_1000009985	F050890	GAGG	MSYDSDFENTYMVEFASGRTIHVGQFTVKDVIEYCADEYENEVIKSIYEEVYVAGEDDENND