Scaffold Ga0209088_10000025

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000025
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 121010
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (71.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F009462	Metagenome / Metatranscriptome	317	Y
F011276	Metagenome	292	Y
F061857	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000002511	F011276	N/A	MIKGLMGTTGLTVSGGDTSLPYVNQNPNNPIQGMIRINMTALEVFNGTSWQSLPSSYATVSLDQEVLDVIQWARTQRTMAMNRLTLAQKNPALMKALEAVKRAEDNFELLSTIAGEYEHVER
Ga0209088_1000002512	F061857	GGAG	MSNVKIRYDDHCSVKNVASGKSVEAEILAFNEGRNLTVVLNKSVKVLMNWNGRMYEGRMAGMDFTSNGPKGQQYSEGR
Ga0209088_1000002584	F009462	AGGAG	MELHESVRDTYKEMVIKEHEGFRLTLKKHEVLMPKGLFSIDMVQESLKDGKVVESQVYNFFMTKEELQNLAQGLTA
Ga0209088_1000002598	F002977	GGA	MNAQVPAEGILKHNEWGDSKVYRVLCECGDSSHEHNVWVEADDHDISVTIYTTTKTNFWSKTRWYHIWTLLSKGYIDTESTVCLKRQSALNYAETLKSAIIDVEEFRKNNVKN