NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000019

Scaffold Ga0209088_10000019


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)146518
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)96 (58.90%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040474Metagenome161Y
F051911Metagenome / Metatranscriptome143Y
F070992Metagenome122Y
F071952Metagenome121N
F098672Metagenome103Y
F102548Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_10000019115F070992N/AMDYYLTLDHWSSIVRQLKDDEREYDILAQDTSDLAKDILLVIRSTRFKQGVLFKQKRGEEYEKFVEKLNDTYDHGAVKRILSNDEFWEVSFSLR
Ga0209088_10000019133F102548GAGMSTFKKWLLLVIVAIALFHAVGGGFADMFGGGTSLFSAAHGWNEGVIYMLLAIVVAIAVK
Ga0209088_10000019158F040474N/AMHFLLEALLVGLFFLPVYWVAEKAGFSKWVTLFLAGALFHVVAELTGVNRAYVLAKV
Ga0209088_1000001917F098672AGGTGGMVASGVGAYAAKNSSSMKGLLWTLAKYVLVIVVVSFILFSVLRMMSTENFVPVTPSKTGDDKTETPAGNVILH
Ga0209088_1000001964F071952GGALTHDTNGNAHAYFTDAKGERPTPLALVMDERVCCDTILRVVRLAPACYLVYDVLVLNGTRIHDSLTFAQRQERIAELLELFHFPDLVALIPVADAPVGTHIRGYEQYDGNPGTIGVYLPKEE
Ga0209088_100000198F051911N/AMEPTSIFLVRYNGRWVTIHPRPFEPERMTTDVAWLQIKEDLDTEEAYRRWFELQRRISRVLK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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