Scaffold Ga0209288_10158075

Overview

Basic Information

• Taxon OID: 3300027762
• Scaffold ID: Ga0209288_10158075
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 731
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F031031	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209288_101580751	F003212	N/A	YLVTLEIETYDGDPRAWDWQILLGHEDKVKVIETQFKGRVLPTSEGESNE
Ga0209288_101580752	F000821	GGAG	MNEEYLRAKFNLCLDQAEKNIQEEDIALAIKNLERANSAMARLFGLEEDGE
Ga0209288_101580753	F001477	AGGAGG	VSNVYTIHPPKSDLILFYEVIEPEGRGERVRWGGGDVKSAIQWLYLAPVGSRILVSAWDSDEEDAHLVGQSIDITELVQHAREVGL
Ga0209288_101580754	F031031	GGAGG	MESREVSGKQSIHYRNYRRARDRALVRLSHLYADE