Scaffold Ga0209288_10020018

Overview

Basic Information

• Taxon OID: 3300027762
• Scaffold ID: Ga0209288_10020018
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1916
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081085	Metagenome / Metatranscriptome	114	Y
F103043	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209288_100200183	F081085	GGAGG	MIDDEFDDPNELWVDDLYDMDEAQLRREIEQYARLARRYPHPTSRHNMAYQFAYLRHSEAMKILEARSNA
Ga0209288_100200184	F103043	GGA	MSPSKETLVLFTLAIANTPLTIGDIAFRSKVSYNTVKKVVLSDERVSSVGNHPTLYYMAKPDVLDEQVVRLTGDTPKEGWVTWIGKISAKLPDFVRIDKARESDDVRKQGMVLEALGVNLILFGRTLQEHSDKPDWFTLIGGNEND