Scaffold Ga0209288_10015121

Overview

Basic Information

• Taxon OID: 3300027762
• Scaffold ID: Ga0209288_10015121
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2181
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F057309	Metagenome / Metatranscriptome	136	Y
F072285	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209288_100151215	F013514	GAGG	MTIEEIQKYLDDNNITFEEWMRANMITDEERKYIDKIWVDAIYKNLGEDT
Ga0209288_100151216	F057309	N/A	MTNPLIDKYFELYPEKKEKPKLPRIEDYEGEETFADELKKLRDTSTIPVSKIKSYDIDDLKVSFQQIAEKVKNDEAQVSSMSMEMDIMYGTKITFEVYVNDY
Ga0209288_100151217	F072285	AGGTGG	MKYPQTVNKSIFIREVYEDTYENPYEYIVDTMIWENRVDELHTIWHKGKDPRKNEK