Scaffold Ga0209288_10000639

Overview

Basic Information

• Taxon OID: 3300027762
• Scaffold ID: Ga0209288_10000639
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10485
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028101	Metagenome	192	N
F040069	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209288_1000063910	F028101	GGAGG	MKNEITKDELEKVKVLNLLMWLQASIYAGDECEPIKWFYNHQTKMLLKRLNDSIQREHGKTITALWNADGAILPDITQQIDDFTYEMSTYGYWMLPELTEFIRKQKETQPKIEIK
Ga0209288_1000063920	F040069	GGA	MKLNLTYPKKFICVQSSSYPTEQLDFNQIAQHIANGTNRTPLERMEELLNEKTYQK