NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10091389

Scaffold Ga0209598_10091389


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10091389 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1451
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007570Metagenome348Y
F050211Metagenome145N
F085108Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_100913894F007570GGAGGMKEDITYIKQYLKTFNDRRLREEYSLYTSLKKPTILENYFKDFIKRELDTRGIGV
Ga0209598_100913897F050211AGGAGGMSKYNNINLYDVSFCLQDDDGNTLEDKNGKPKLFRYKGDIYSPFDYLQSITEDTTLDMLEEVK
Ga0209598_100913899F085108GGAGGMSEPDFDMHIGDLYEETLAKYSSGQLKKDGLIMLPEEALQ

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