Scaffold Ga0209598_10080566

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10080566
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F036073	Metagenome / Metatranscriptome	170	Y
F076813	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_100805662	F014710	AGGAG	MNTEVEYKTIPTQFKKKGFTYTQLKREGKKAIFQQTREDSSLNNYEVVKIGRHNGYLMGGVMIEPAETYPGSSLWGITAWTCCSIDEALKRFEALPS
Ga0209598_100805664	F076813	AGGAG	MKHHNHFDQNGDIRDIFAAVAMLGLMQQSNPPVPKWVAAQAYKYADAMLDVREEVSHNTEIK
Ga0209598_100805665	F036073	N/A	MSETIEQTKPYDADLHCKKIAWMVKNSPDWDYETQTLEEYLETVPEYPTDEQVKDFNHLYVEPFVPFKKEIPFKGDEVNEAS