Scaffold Ga0209598_10067095

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209598_10067095

Scaffold Ga0209598_10067095

Overview

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10067095 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1784
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100664	Metagenome	102	N
F100730	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1006709510	F100664	N/A	NSKGWLCDNCHSSNITKLHPEIEEDLFCFDCKKRGYQVSEWFVMRNNKKVRVIA
Ga0209598_100670958	F100730	AGGA	MKTKTFNNYLDYINSDLNNWSYVSLDDFKKAQNKQVKVYFDKQENEIDVVLINKKKGQ

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