NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10063590

Scaffold Ga0209598_10063590


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10063590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1847
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005737Metagenome391Y
F010821Metagenome298Y
F043822Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209598_100635902F010821AGGAGGMTDFTFSPADFNSTEITVVANTPDGKQYLAERYGFACVSINIRKSAAPELADSFEFQGLSYA
Ga0209598_100635903F043822AGGAGMNVVFDEIIDGFRFTGLAEKEEGEKATDISPSWPTFYTVFAMHIDGSHKDCLEIINPAIVQRIEKMLADNEC
Ga0209598_100635904F005737AGGAMFEIEKYSKSTDWAQVALWIVSVAAMIVVALDVFVWRP

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