Basic Information | |
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Taxon OID | 3300027760 Open in IMG/M |
Scaffold ID | Ga0209598_10063590 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1847 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005737 | Metagenome | 391 | Y |
F010821 | Metagenome | 298 | Y |
F043822 | Metagenome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209598_100635902 | F010821 | AGGAGG | MTDFTFSPADFNSTEITVVANTPDGKQYLAERYGFACVSINIRKSAAPELADSFEFQGLSYA |
Ga0209598_100635903 | F043822 | AGGAG | MNVVFDEIIDGFRFTGLAEKEEGEKATDISPSWPTFYTVFAMHIDGSHKDCLEIINPAIVQRIEKMLADNEC |
Ga0209598_100635904 | F005737 | AGGA | MFEIEKYSKSTDWAQVALWIVSVAAMIVVALDVFVWRP |
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