Scaffold Ga0209598_10053966

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10053966
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2053
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009136	Metagenome / Metatranscriptome	322	Y
F009262	Metagenome / Metatranscriptome	320	Y
F081270	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_100539661	F009262	AGGAG	MEQIAKELSKLNATMAEILYLIQKEMKRGEELSKKYDEERKKN
Ga0209598_100539662	F081270	N/A	MMKNEKKTEPKWGWVDDNHISILWNVDDVKTQAKIMKIKLNKQQCREILDGCLNSHDASIGISWDILEHHIHNLHGEKNE
Ga0209598_100539663	F009136	GGAG	MNRLKKLGFKKIPGTEPGFHMYELTPAKLQAFDENFKPQASKRASLQARKRTSLTSK