Scaffold Ga0209598_10036274

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10036274
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2666
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F011075	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_100362743	F005630	N/A	MSKNLYEVGGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGINSVDELYDFVIN
Ga0209598_100362745	F007751	N/A	MNQIEELKSVIGKDISQNQSPTCRARLVSVGKSNCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0209598_100362748	F011075	N/A	EFETNLSIIVGSHLNDAMIEVSVNPQLAKKRLKFVKAITFFNEDLTKGVTDDYCDWLWNELFENQRWGGPYVKGSNYVI