Basic Information | |
---|---|
Taxon OID | 3300027760 Open in IMG/M |
Scaffold ID | Ga0209598_10013309 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5176 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (93.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007027 | Metagenome | 359 | Y |
F020906 | Metagenome | 221 | Y |
F046904 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209598_1001330912 | F020906 | AGGA | MPTSAQVSVGVTATLLVAATGFDQTVWIHNSGGALYIGASNVTTANGYKLDTGDKMELPVGDNEGLYGIVASGTNTVFVLKQIN |
Ga0209598_100133093 | F007027 | AGGCGG | MSESIRFECRSCKKITDQLERIVTDNLPANVKVLQCKVCSKMSVCLLVTYADV |
Ga0209598_100133098 | F046904 | AGG | MNSLDLMVVGLVCLFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALKEAEAKR |
⦗Top⦘ |