Scaffold Ga0209598_10010419

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10010419
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6069
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F020664	Metagenome	222	Y
F065525	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1001041914	F020664	AGG	MTKPQPKHNLIRFSEKEREIMRTIGGGNISEGARICVMWGAHFWNLGLTTEMDLAHIGLVTVSSTDNYPHE
Ga0209598_100104197	F004231	AGGAG	MTVKISDFKHQICVYLEGIGECLVCFDILTPGEELDADHSDDYDIDFAVFDEQDRHITYDISKRHYNYCENKATDEMFDITTAWRKDWEGSV
Ga0209598_100104198	F065525	AGGAG	MYLKTYHKQMLRRLEHQPSPLKSFTHGDQNVGNVSVHFENYLNDLQNFGYVVNIEDTWHITGYGLAALHEKKNVATPTKMSNGTTTEFYDGKDLKQTCARLGAYDFLKYPSRFGDNLTLPRIHI