NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209598_10006014

Scaffold Ga0209598_10006014


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10006014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8532
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004839Metagenome / Metatranscriptome421N
F010541Metagenome / Metatranscriptome302Y
F031483Metagenome182N
F052398Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1000601410F031483N/AMNILKGRVKYTAGKVFEGQYGASINAAITLDNGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANELPEKVNTSTEQTNIQQTANVAPKMNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
Ga0209598_1000601414F010541N/AMVKNIYTVMYFGNAKRYQDLCEEVVAYSKREAVEKVYAKMRNEDYFPEDEFSWGGLVKDCDGNVIADAHDETIEYDGGYFYAEPVIQ
Ga0209598_1000601417F004839N/AMEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGVNAYLTAIFLPINFWVAITASTILQLGRFAVVFMDFLNPTKGRSPFPTKIALGATVIALIEVFFGLMEKYSGAEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLEEPKVIKRRKRRVAAKKVTEDAPKESKGYVTSFQTITL
Ga0209598_100060144F052398N/AMNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIIESLPKINQVVKQILPLYGIDASPEHLIEITKFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRGKMEEEQRQVEAKRKFYAEFPEMLTGFKGESYEDVPVYWYDAAMSAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.