NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209598_10004131

Scaffold Ga0209598_10004131


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10004131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10735
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000506Metagenome / Metatranscriptome1070Y
F002135Metagenome / Metatranscriptome590Y
F007522Metagenome / Metatranscriptome349Y
F028508Metagenome / Metatranscriptome191Y
F050363Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_100041311F050363N/ASMNGGNGMDGMSPNRYAMGYQLINRVRGLIAPYSSPNTMVG
Ga0209598_1000413110F028508GGAGMSKSTRPMIRIHNQETDEVIDREMNDAEFAKYEQDIAAKAAEKAEAEAKATAKQIIADRLGLTADELKVLLG
Ga0209598_1000413114F002135N/AMANTRKRKKINRRVVRKSPDPLSKLEVFYIAKHEMFKAARKAGFSEPIALALMDSPSSMPDWVVGEDGIIPTIPTPDEDDD
Ga0209598_1000413117F007522GAGGMSLQEAGLLWVACMVAIIVLYGMYENAKTVAYWRGRHDGWTMHRRMIDNKTDANNN
Ga0209598_100041315F000506AGGAGMAKLKITRANGEVSEHKITPGVEYAFELKWSNGISKMLREHEQQTHIYWLAWECLRRANITVPIFGTEFIDSLETVEVLDEEKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.