Scaffold Ga0209598

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10004107 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027760 Open in IMG/M

Scaffold ID

Ga0209598_10004107 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10781
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (10.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10781

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (10.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F019647	Metagenome / Metatranscriptome	228	N
F045094	Metagenome / Metatranscriptome	153	N
F054865	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000410710	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANLDQKDAYKQTLNVISSVFPMYGIDGDFAFYANIAKEIVKIFGQIAANEIEIAFRLFSAESLELDSDIKFYGKANMHTIGKILNGYMVYRRKIIASHDNEIAALRHQKDMEERGQKEREKLYAEFPTMIKDFSGKTFNDVPLYWYDLCVQFNMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK
Ga0209598_1000410712	F045094	N/A	MNDISKRFASYLMDDYKIKGTTEEDVDKAINRIFRFELLDDAQQVLFVEIMNEALNVPWIAEQLTDVWDRYNQEIYDCQKEDSYENN
Ga0209598_1000410713	F019647	GAG	MTVKKKIAMKITKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQAITLIDDNGKFKVLEDDTQKMPAPTGVAVIEQQIAEKPDLAAIVFEMSAIYTQAYIDIYNKISEAGVPPESATAATSTIFIQVFQKLK
Ga0209598_1000410716	F002778	N/A	VKEYNAQMMEIKAFCDEVNTWISVAPSAEDLDSCDQYLRQLSAYYSRYTVISGINESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT
Ga0209598_1000410719	F054865	N/A	MEVKTNRYIIKYKEGFVNVPANNVEEAIERFKELRIETSAKELTIVPSNEMYKKREEIFG
Ga0209598_100041079	F008078	N/A	MKQTPKEKAKELFNHYYILIQDIGGELGQEILVSILAKHCALFAAREVLKQKWNIEVEGSYDEYYYWEEVEHEIENYEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209598_10004107

Overview

Ecosystem & Geography

Associated Families

Sequences