NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10002897

Scaffold Ga0209598_10002897


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10002897 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13165
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F001280Metagenome / Metatranscriptome732Y
F007921Metagenome / Metatranscriptome342Y
F021988Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1000289721F007921N/AMINWLVNRIFRWDSLRHAIFDEVRLYQSIDRSMWEHEKEGPTNLTWSEGDRWYGWTYNINSKRYYFDDIGNESLMGLWEDQWLMESDSLEKSIVNG
Ga0209598_1000289731F000852GGAMTTKREYLKQQGITVGVRGRFSGAAKVVLDQAIAKGVTFTAEAPVKKAK
Ga0209598_1000289732F000441GAGGMRMSDQYINDQLSKAQALLWSGSLHEVDEAHNIVSNLIRERVEQIDLE
Ga0209598_1000289734F001019GAGGMTYEPSLEILEVEYSCSPGGIDMFEVYDKSDIPLDMPIYETENLTEAVLFCYNLGKDFTVKTLAEWNERELAYEA
Ga0209598_100028977F001280GAGMCVECGCESVGSQTGIAPVTIVEASRDGDSGLTLSMSSTPEQTRQFINE
Ga0209598_100028978F021988N/AMSSFQKEDGTGTTPPPNGAAAGAVTSNSATRKHPRQGLKTDINRHGIRRELNTNPRPPKKTGRKKI
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