NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10002509

Scaffold Ga0209598_10002509


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10002509 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14338
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011143Metagenome / Metatranscriptome294Y
F088303Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1000250911F011143AGGTGGMHKIEITKKDGKKITYDLTPSVKVAFEAEYKTGWRKRLGELQMESDLWWLAWRLEKDLGKTELAFGDDYINQFLDVDLLYEAKNG
Ga0209598_100025096F088303GGAGMAKPQITIHNIETDEIITREMNNSEFAQYQKDQESDLARQAEAEAKAQAKATAEGKLAALGLTTDDLRALGL

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