NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10002360

Scaffold Ga0209598_10002360


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10002360 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14797
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F089937Metagenome / Metatranscriptome108N
F093195Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_1000236011F012098AGGMPKVHNIGPKYFIQLTNFPFKWGFKVIVRGWTQEIEPPYRTSTPFIVRLPRYKALALGKWAGTKTEEEALNLALGRRDLTYEDFSEEAGWTPAPDSDREAGGNNPYSRFDLMDGAVDVYDWQTYYNLAKTAE
Ga0209598_1000236020F089937GGAGGVATIASLADRLRSEIGDTPKSFVYQFTADGGTNRYLIPYSPLDGLNLVVNLNGADISEDVEVEEATGYIVLDTVPTADDTIIVAGNYFRYFTTTEVQSYINIAFLEHSAFHTDAYGRSVSLQNIPTLEEYPVVVYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIQTRKEQYKELCSQLGIGMFKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVSIVTQDLFVYEGDAYEFTIVLDFEVDTYTAKSEILGVGIPGVIATFTITFPNVGTADGAGLRTLKLALTGTQTRMLPSTSYYDVQLTKDGVTQTYVRGKIFKTEEVTE
Ga0209598_100023606F093195GAGMAGAIDKGHKSYNDFNDGYNSRQNPLTAIDKKILNFAVRVSNNPTIKTHGQILRNFGMYPPEFWIKAQNLSDHPEVDPQMKEQLSRVFPEPSRPGPMGGGADVDTESKKFSHGLEW
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