Scaffold Ga0209598_10002146

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10002146
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15608
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F005088	Metagenome / Metatranscriptome	412	Y
F007027	Metagenome	359	Y
F012572	Metagenome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000214615	F003067	AGG	MSQAQAYIAVALGIATLSGLMAGLVNHLVKYYLSELKPDGNGGHNLVGRVERIELRVDKIYEMLLEDRLSK
Ga0209598_1000214618	F012572	AGG	MRASLVYADIYRLGAPGMSDQYELINLQAMTGKLFIGGELAGEYKVEQCDKCAMITQLDKFGYQKNSYENIIWFCKGCR
Ga0209598_1000214620	F007027	AGGCGG	MSDSIRFDCRSCKKITEQIERIVTDNLPPNVKVLQCKVCSKMSVCLLVNYADV
Ga0209598_100021466	F005088	N/A	VGRGSFGYLVAQIAIETGIPPQYLLDLDADMFKNMLKVINDRAKEMQNANRSKGRR