NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209598_10000684

Scaffold Ga0209598_10000684


Overview

Basic Information
Taxon OID3300027760 Open in IMG/M
Scaffold IDGa0209598_10000684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27620
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (83.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F001424Metagenome / Metatranscriptome698Y
F003407Metagenome / Metatranscriptome488Y
F003662Metagenome / Metatranscriptome474Y
F011843Metagenome286Y
F074415Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209598_100006841F074415N/AGLTVAQTSRGIVITSDPAKVRIIDQGSEKDVGMALFGYAYDQAKGFDNVAVAMDRAGTPVAELAIKPGQERRAMRAASLLAPDTGSTNMMSRGDVVNTRLKGLLD
Ga0209598_1000068412F001424GGAGMVQQVEQLSTGYPQSDKWVEDERVFCHQCSKAVEVDMKQSMPAEQMERHRKVNSKPLQWMFDQAKIRNGWATVTWSEHQCSQTGLAAFPTDVKHRCHMFQTKATAVESEAWWLT
Ga0209598_1000068415F003662GGAGMKSKLATVVLKGQEWIVIDSDEEKDGKVFCTLMSPDGSTVLHVWVEINKIVGII
Ga0209598_1000068416F011843AGGMNITLLTKVRYLFNVDYVPRSTNRHNQKQYIKAIRLLGDKWLTHPHNKITRIQ
Ga0209598_100006845F003407GGAMNQDLPPAIDACLDLINDLLHPEVFGHAIPNEVKTRAFVVKTMLERLKTRMETDTWPEA
Ga0209598_100006847F001182N/AMVVSVKYNPTPFCPVDLLLFVCCIEDVELVCFLEYSPEEKGSVDSYGAPYEPNIDECMTLNNAYIAGTDVDIAHMILQSMVDHIEVTALEKFKDGDE
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