Scaffold Ga0209598_10000374

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10000374
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36036
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (69.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014850	Metagenome / Metatranscriptome	259	Y
F015996	Metagenome / Metatranscriptome	250	N
F029659	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000037419	F029659	AGGAG	MLQNINSAIDAFQSTKTQFVKTFVKNEELAKPLNTFIEAQTSYAKAVAVEVNKFYTTLGLSAYTFDAKKAFSKSK
Ga0209598_1000037429	F014850	GGAG	MKINEDYEITTRDIKYKDKDTVASIKINSGMYKDVEFNFGEINFSEEENPDGTYSIGFNYDIIDEEHKALHGNKNFETHLGEILNDLLKHSLEEAEKRYKNELGTKNTETPDIG
Ga0209598_1000037431	F015996	N/A	MDLKNLNVPLNYLKEKRDMIKLAEWYNWVVKSFGEICGWIGLILIHGSTVPATYLAIKGEPTILPPLSMVVLIWSGLLLFFVRSAIMKDKLYMLSNGIGFFLQSIMLAFLVLK