Scaffold Ga0209598

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10000364 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027760 Open in IMG/M

Scaffold ID

Ga0209598_10000364 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36289
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (46.30%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

36289

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (46.30%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F004740	Metagenome	425	Y
F016125	Metagenome	249	N
F019100	Metagenome / Metatranscriptome	231	Y
F048176	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000036412	F048176	N/A	MNDNDLKQAAVINAATVQFRGLLETHFKQIAKAAQESFIEDENQTEPKAKCAFSVEWDSLAAAPKINVKINWSVRFKDEAECQIDPLQSKLKLEDADL
Ga0209598_1000036435	F016125	AGG	MAAVRDFDPTQINADFSAILAQAGIAFTYQGNSITGVWSASRDAFADFEDQRRDDSKFTVFLLTSSVSAVPKVTQTLSRAGITYFIERVTLDAEGAGCEIGVCKAI
Ga0209598_1000036442	F000273	GAGG	MSDESAKSALVEKAAFAVLPILFSCVVYLMSSLSSLSREVTILKQQVSLVVTSDNKQATNTGAELAREKLRQDLEKEIQHNRDMIFDNRQTIAVLNERIGALKK
Ga0209598_1000036448	F004740	N/A	MLDNPFLGLDGATLATLKTKTLDAIQAVLLNQSYSLNGKSVSRADLAQLNNMLGNIQDAINDVNGTSTDTVFVSFNGN
Ga0209598_1000036452	F019100	N/A	MTDAEQSPSEILARRNVQNIAVKLKAGKTLTTSERKALNEFQAEQIGGWVKDLSALAKELGLTRQAIYDARARFPDAPKKHEDGKRENLVAWQQFCGDNLIGKDTATKNLAELKAQLMQREITLRDMKIAREAGETIAKEIVDDMFATLAQKLDLLLRLKLEVELGQRVIGKNAAEANVEGALILDEIREVINSNIALYQNDMVARSANSEDGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209598_10000364

Overview

Ecosystem & Geography

Associated Families

Sequences