Scaffold Ga0209598

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10000061 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027760 Open in IMG/M

Scaffold ID

Ga0209598_10000061 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	78103
Total Scaffold Genes	102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	93 (91.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

78103

Total Scaffold Genes

102 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

93 (91.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F018701	Metagenome / Metatranscriptome	233	Y
F028803	Metagenome / Metatranscriptome	190	N
F037059	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000006157	F028803	AGGA	MTDLVANEYGVEFDHIAITKLRIHRTNGMWLVEYRRVPRWPLGLDRWWWFDDGTYTDYADASNRVDHLIGQGYVSKARFQTVKEFNFE
Ga0209598_1000006161	F004477	AGAAG	MGLLSFITKEETITSLQDLELAKGKIQLTIMKMAAFILGLIMVAVVFTMMVGLFVPNSVIDNNEIFKIIGPAFSTIVGAFVGAFATMMGMKTAEFDPNVKVQELGKTDHVKIAQARTEEAKAHSIELDNEAKELELVNKYHDSDEDHGPF
Ga0209598_1000006174	F037059	GGA	MAQFNTGNNAYQAANKTLFEVNQIATANGSLVTATNPFPVSGTIITLEEAGALYSFNNHATNTNRGWTMDDTMRPIVSFRNGSANTADIIKIVEYEIGNNNANASTIIYEWYEGDIAITGATIPAWTTFGVHSQYRVYQDKNSSNQGNAFTPNGAIMRHSGIIIGKNSSADEGPANMHGGETPNMMTLCMKRVDSSTKLDVWFAFTIKELI
Ga0209598_1000006179	F018701	AGGAG	MSAASDKYERDVAKNIDQIPGVKAERPSVGTDYPDVKLTYNNKKTWLEVKMSHTDNLSNPRMFYKNGKWQTTYKTPAAAAAVEILNKSPMTKKFIEEISKFSGIPMKDLKIPSSKTGLKEPGAVPLHIMKAYFSKPGINRYIANKENQDLGKVVTDHYTIGKTEPAYYMQAGDDFYKISNKDPFGFGSSIPLLKGMGDFKVRIGTRTEFYEVQAEIKIKKMPNSDYSLKPGSKKKNPFLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209598_10000061

Overview

Ecosystem & Geography

Associated Families

Sequences