Scaffold Ga0209598_10000031

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10000031
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99582
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (72.46%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002598	Metagenome / Metatranscriptome	544	Y
F007691	Metagenome / Metatranscriptome	346	Y
F009531	Metagenome / Metatranscriptome	316	Y
F012455	Metagenome / Metatranscriptome	280	Y
F014142	Metagenome / Metatranscriptome	265	Y
F017133	Metagenome / Metatranscriptome	242	Y
F020910	Metagenome / Metatranscriptome	221	Y
F021757	Metagenome	217	Y
F034575	Metagenome / Metatranscriptome	174	N
F040623	Metagenome / Metatranscriptome	161	Y
F056558	Metagenome / Metatranscriptome	137	Y
F084135	Metagenome / Metatranscriptome	112	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_10000031127	F000264	AGGAG	MAAKLYTSETWLKKRFLVDKKTPKEIASECGTSVETIYVYLAKYGLRKSKR
Ga0209598_1000003115	F056558	N/A	MDIMGILDNLENAWDPEFQFESTPIFDKDNMGREIFWNDLGRPENDGLALKMFKEECCDNCTCSTNA
Ga0209598_1000003116	F093845	AGGAG	MKVTLTSTSGATKEMSFDTKEHLLEFITLYKATLHQGQAVCIDAPLVGIHSGWIQGTKV
Ga0209598_1000003118	F014142	AGG	MISLNEITVVAEPTHPMSSSNTKNNNIFRLANGNYISRMAYVYMVASENLISHKYLSPNESKWVFANKVGN
Ga0209598_1000003120	F017133	GAG	MSIWTKFATVNDYPKGLMNLCPCGQVVLAPAMYHEGFPWWENPNKCKELFEGVTK
Ga0209598_1000003127	F012455	GGA	MLKEIKNKVIRIQELRRSNAATPIPNKKKYTRKVKHKNKLQ
Ga0209598_1000003128	F002598	AGAAGG	MATKLFTIENLLVGKTYRSRSRHFEGEIVSATPRPEIWYGENTEAYLIGVYAKNKLSTQYATIAVKTK
Ga0209598_1000003130	F000447	AGGCGG	MGFIEFARIDNEGVEWVDLESATPAELLDLEIGLFQEGAI
Ga0209598_1000003132	F021757	AGGTGG	MMTRKDYVATAEILSSFKDLIGDEFTFHDLVDEFASMFEADNERFDSQKFFEACNKNNY
Ga0209598_1000003137	F002515	N/A	MKKNAEELRRLMELRRSNAASAIPNKKNYNRKKCQSLMLELKKERGPHYE
Ga0209598_1000003144	F009531	N/A	MNYSCSPGGVDCWEATIQGYGTSTTASDFKTAGEALNWVIDRHPDEVLELVVTSLPAYEKEYV
Ga0209598_1000003146	F007691	GAG	VNTIDELINEIYESNFSHLEFEENMGGDACDCHIHTTLNTIAHYAGIEVGE
Ga0209598_1000003147	F040623	GAGG	MKVRISLEQTIDIDDAMSNDIGFELYGPPDMSNEDKVDYLIARFAEDIDTMVKYDEVMGNISVEYIED
Ga0209598_1000003149	F020910	AGAAGG	MWSKYTFVCDPDECDALLEFTARDGYGFPNGSVEMKCPCGRMMNYISYEDAWEPIITDVSKVTPVTVVKINTNPYN
Ga0209598_1000003151	F034575	GGAGG	VNNIELDPYLMKQVEMGMDGADILHGHLKTLMYEAEQVLDRCIEAEEYSEEAMDSMARTEATGYLDALSEVYALTYAIAFAKEDVKNRKEILGG
Ga0209598_1000003169	F084135	AGTAGG	MINEKNNYFQSESKRIGDEFEELVYQDLLGRGFNTIDRDYYFAGSGCEVDFRVHSDTRFEYIEAKGGKAGEGKRPGAQRTDNVKKAIANGALIKTFNDIYYVVYFSAKPEVGSYSDEMINIALKYKIIDEVRYLQDA