Scaffold Ga0209598_10000028

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10000028
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101435
• Total Scaffold Genes: 174
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (69.54%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004641	Metagenome / Metatranscriptome	429	Y
F010619	Metagenome / Metatranscriptome	301	Y
F014135	Metagenome / Metatranscriptome	265	Y
F019602	Metagenome / Metatranscriptome	228	N
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y
F029748	Metagenome	187	N
F030431	Metagenome / Metatranscriptome	185	N
F030669	Metagenome / Metatranscriptome	184	Y
F030988	Metagenome	183	Y
F036228	Metagenome / Metatranscriptome	170	N
F043225	Metagenome / Metatranscriptome	156	Y
F043921	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_10000028103	F014135	GGAG	MSNGLMIDFDTADRITLLVLKDQLKYLRKELEDFKEGKYLHPEDVTNNIKLIAALELLIPYYGGTV
Ga0209598_10000028105	F043225	AGGA	MNLDLINAELQNVALTQQQEEIDLTYQDFLDTMNAYHDMMMYASHSYDEDAIFYGVN
Ga0209598_10000028108	F019602	N/A	MDDRAVIERYILEAWDLGLTGTDVVTYVQYMSSIPVFEIEPVLQNLIARMSE
Ga0209598_10000028113	F010619	GGA	MENPIDFENSHPNMEKIIDAEGLLPVTKSVAKMLMRNPYTSLGKFFKKLSDENLEVLMEIIDEGDSEFNDGMEDVVLMTEMLSRAEGVPSQCIEDITENVNYFGACVTCVSLARKGLVRVYYDNMSFGRDQGDKVLVEKID
Ga0209598_1000002817	F021534	AGG	MKLETENEVVHFLQELLHPEGFGWSVTAEVRKESKRLLIMIESESNEQDSTIRQSVRNV
Ga0209598_1000002818	F020540	N/A	MSKIQQFGRVFETFDPSNKKHRKIFHDVLRYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGKYYIEKEFGVLIDDDPFAGGELTRTRPNPCPHIRKKLK
Ga0209598_1000002828	F004641	AGGA	MAEKTAEQAHEKGAFIEKLLFALLPLLVGSVGYLIQALGSIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLCQDLEKEIQKNRDAIMENRQHIAILEDRAGMKKMGPMKEH
Ga0209598_1000002834	F030669	AGG	VTYYVYGAIGSKSTEKAELLLNVCRRKYKLFILGQDYTRDQLDKLIPGTTFVPHIYHNLTYIGGINELHDYLYDELRIEKS
Ga0209598_1000002871	F036228	AGG	MSDGGKGSAPRPFSVSQEKFADNFDAIFRKNMKAAEEIHSDKGYQLGNKEDYEAFAKKRQEAALDEMVRVSQELGLYDDEFDAIHKYNEETQDVKFRQTYKK
Ga0209598_1000002885	F043921	GAGG	MKLFFIMGVLVVLTGCGTVGGTLQGAGQDLNQAGQYIKNVGK
Ga0209598_1000002888	F029748	GGA	MMKFLCGCAVGIFLATAGTSGIAMLIDSSVIKFQNTIKESVREQQPRQHNQQLKMESI
Ga0209598_1000002889	F030988	GGAG	MKHWGELTDLETQIIRVGEFKNLFKLLVAGTENYVDIKVLQSAIYTLEGMIDDIDSTLYEKFQIVWDAVKNEDTTEGGEEEFGFDSLQEEYESKWPFDNMNGVSPSNTFTTTPYAFEHQGSTVQNNSNSYEEEAFMELEKALKNWKNTAP
Ga0209598_1000002895	F030431	GAGG	MSDIEIEINEILDTTVMLCEEIAEQVGCPVEWVEKIVEKRWNDLLFSDADFMNGYDMAKENM