Scaffold Ga0209296_1039920

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1039920
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2518
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006107	Metagenome / Metatranscriptome	381	N
F013291	Metagenome / Metatranscriptome	272	Y
F032255	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10399201	F013291	N/A	ALVAMANEYGLPQENVGIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVSEIYNTAMQKAMDDETTEMINHMTEALLANGKVLEDNGISIK
Ga0209296_10399202	F006107	GGA	MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALNAPSNDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI
Ga0209296_10399203	F032255	N/A	MANSQGLAYQFGSPATVTMLDTDNSTPIFTALASIESYDLTHEADTEEVRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVGITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTAAAVALNV