Scaffold Ga0209296_1029166

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1029166
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3058
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10291662	F007029	GAGG	MGFLDNYEDVNARIKRFRSEFPSGRLVAFIESFDIEKGTILVRAEAYREYEDMVPSAVDYAFGNVNTYPQNMRKWMVEDTITSSYGRVIGLLTPSLEHNSRPTVQDMEKVETLPASADPWSTKASIEDMATMATAIVEIGTQLGGELVAEAPRCPHGTMIWAEGKAKSTGKPWAAYKCTEKLRANQCTPYWHVLGSDGKWKPQV
Ga0209296_10291664	F029049	GAGG	VAVCRVSQLAKVILDRSQEVTAHRVGLERTIVRNANTSDVSNFGQVYKNWHELVWQEAEGASAETAVANYFGDYAFVPKIHNAHEEADVGENIEVKWTKHTNGHLILQNRGPGRPNDVAILVTGWSPVYILLGWMPVHMAKVPKYKHPYQDNYWVPRSNLFEMQYLKRSQYGV
Ga0209296_10291665	F030767	GAGG	MAYKTKCRLCAKVTEHIERVVTDNLPPYVKALQCVKCGVMGIVMMEDVNGA