Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1025713 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1025713 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3297
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3297

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011646	Metagenome / Metatranscriptome	288	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y
F036551	Metagenome	169	Y
F069714	Metagenome	123	N
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10257131	F006618	GAGG	MSKIKQHLEKQIVIKGKEHEETGWKRYIYFEYEGNEYELTLFYDEFTGYDTYWRVPNTTPNWVVEWDSEAHEGMSFTHYLDDLTWENN
Ga0209296_102571310	F011646	GGA	MSNVLELRNGAVKRIIFYEITDAQNIAIWGGETPSEALKWYRESPLDSKIWVSEWLTDEEDAKEVSPQIEITSIVLSTIANCMERWSN
Ga0209296_102571311	F018703	AGGTGG	LSETKRRVETAKAQAVRQRNYRRARDRALARLGNDYPNVYRTYLEEEMEADDKMGKKWLDISGNTKSITSRSR
Ga0209296_102571312	F022400	AGG	MKRTIIKSLQRTTLRLVSGGVGESGSASSPFGPLKVGLITMQPTNEVQALTVLLNSLEKQIAEANIKSLEVLNTFLRDTEHLVNHTSSFSRTDITNDM
Ga0209296_10257133	F094887	AGGAG	MEKELKEIDEALTNLWWSAEISDKAKLWWNDHYQEITERELAK
Ga0209296_10257134	F069714	GAG	MNINVKESYMPEYTKAITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLEKAELDPEFNFLFFIDELAWEYEAGNSWQVKV
Ga0209296_10257135	F036551	GAGG	LAGEGMKETLEVLLSNEIRICELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILVNKGESK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1025713

Overview

Ecosystem & Geography

Associated Families

Sequences