Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1024964 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1024964 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3357
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3357

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053831	Metagenome / Metatranscriptome	140	N
F060634	Metagenome	132	N
F062703	Metagenome / Metatranscriptome	130	N
F063331	Metagenome / Metatranscriptome	129	Y
F088345	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10249641	F088345	AGAAGG	MSRKYYRVKKMDELERFFLPPDIQSWIMRYDAGNEQALVKQVPLTEDNISMIDRLADLLPLTRRYRGPRHNSRNFTRDCPKKDAERVSVYLREGGIDV
Ga0209296_10249642	F053831	GAGG	MSNWQKLNYSGDKFRPFHIKLDYCDEDMTLRDIYKYDDDQEWIDKTAQEITDGYKYFVILRAKVYLAGVEVGSHSLGGLLFDDTDEMESMMRLDYEGIIEEAVETAKHNLKQMADAMKERATA
Ga0209296_10249643	F063331	AGGAG	MTDIDNFALLNDLKELLRQVDIGDTEQVRSELQDIIDQVQADCDERHRIYLERVERYMGHVDSALKDKKQG
Ga0209296_10249645	F062703	GGAGG	MLRKKIDNSSKAGMMVGYITPGARVVAVESGWNMTPVILAKLLKDISGTKEAAMELVDSAVLVPVFRKEDYEYVEGFADVLESHLNFHQDNLRTHIGHLFLFMKGAWHYSDNAIDWDPISEVFIDGSGITWSGVRDAVEATA
Ga0209296_10249647	F060634	N/A	MIDVIVGFFAVIFFLAFYAYIGYWFLDLKTLPAEHWVSRSANRVRSFFGDVWEPMRWKTRRLDVRLLLVIDNLVMRLTNIDFVLLSKRLWAGLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1024964

Overview

Ecosystem & Geography

Associated Families

Sequences