NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1024814

Scaffold Ga0209296_1024814


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1024814 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3369
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F042157Metagenome158N
F049410Metagenome146N
F062749Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10248143F042157N/AMKLKQKYHAPDNRQLKKIADYLIYVLLPFIQTSLALAESQGLISLKQAFWGGLAATFLLINTKFLTKFTTETPTKTAVIDGDGC
Ga0209296_10248145F049410GGAMTRNTRYTNGKEIITFVKIDFIVIGGRKIDHVYFRRKDKVDLIMPLVEWNIKGKFEWEII
Ga0209296_10248148F041191GGAMKLLWNPTKLTCDFIVPEIEKSDGVQKVVGFSRGWHHWNSIRLGIRKENDYCVLYFYAYIKGERTIQRLGRYAIGDLVKCELNWGSYIECKANDGYAFRIAPRHSLPIGYMLYPYAEKDGVEGVQVDIDIEINNLKIS
Ga0209296_10248149F062749N/AYLIILFLYLPKLILMKTKLSLFMWALASMFMSFWAVSFAMTGVYYDNSELLTFSISFCASLVSAVCGAGFMQQWMKR

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