Scaffold Ga0209296_1024641

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1024641
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3383
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F042337	Metagenome	158	Y
F085695	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10246411	F085695	N/A	MSIMRTKGMGKVVLSATPKGVNHFKELYDMNTKILHIKNYDKDLTRGVFYGWDVISADETDESYLFQLQNRTDIKLRVYITLGRVLQYSSLPYYPEMMYQCYIHDDEGSWSSTQWFRGHDIT
Ga0209296_10246412	F019478	GAG	MYSLVGYYIRLMRNITNEDKPMLLKIINVNKMVGTVYWNRRFKCLQVHETDTNYRFQFDDVQIPNKYVWVEVRKDGHYNQENQVWEYRLNYMKCPHHVVTAEWFEDYKNVIDTFGAALKNSM
Ga0209296_10246413	F018001	N/A	MLTIQNIGDLKGAQLNDWKVLDAGEDIRAELGKNIYIITFARMDNKGVMLDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDSIVWPAVNIRDKDVFFGRVLYKINEEYYKRR
Ga0209296_10246417	F042337	AGG	MELVIDGLDKIRRTTYLARKISNIRIDKRNGARAASYVFTFPSIDSTLDGWNRELEVYLCKFPDGSGRYELFVMGLHGMTCHYLELEEIKDMVVFQVHIISTMNKAKKYWQSV