NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1024604

Scaffold Ga0209296_1024604


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1024604 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3387
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002778Metagenome / Metatranscriptome530N
F019647Metagenome / Metatranscriptome228N
F045094Metagenome / Metatranscriptome153N
F090393Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10246045F002778N/AVKEYNAQMMEIKAFCDEVNAWITTAPSGEDLDSCDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVSHMTT
Ga0209296_10246047F090393N/AMALDRKTPFNVSFYDHEQEKIQNWALTGSSRLALLVHTIAFEKDKIEANNSNKEIIIKSALDYLIHDLKKFLETPYTTEDNA
Ga0209296_10246048F019647AGAAGMKITKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQAITLIDDNGKYKVLDESQTMPAPTGVAVIEQQIAEKPDLAALVFEMSAIYSQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR
Ga0209296_10246049F045094N/AHYMNDISKRFASYLMDDYKIKGTTEEDVDKAINRIFRFELLDDAQQVLFVEIMNEALDVPWIAEQLTGIWDRYNQEIYDCQKEDSYENN
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