Scaffold Ga0209296_1023842

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1023842
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3450
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007798	Metagenome / Metatranscriptome	344	Y
F019824	Metagenome / Metatranscriptome	227	Y
F093852	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10238422	F093852	N/A	MGKITFGNKEFIPPSADSPIETPLENPPEKLIKSPSRKLTKKEVLILIGMVSLLLFLGWLPTQLIYKNKVKKLEQTIVHLDPLNKVEVDLRHKLANLEVDLKVDDDDLYKILSHMRNERRLLILDQLDQIQLFKSKQNVYMFDYFNSKTQELKQKELLYHR
Ga0209296_10238425	F007798	N/A	MNTLDKPMLTQFVRDRDGQPRGMVVATVIDGSIRFGWSYTNTKAGDRFNKQKAIVISTGRAEKGWGQKVKTPHRVSKALNQIAERSIRYYKGVPLVINAQ
Ga0209296_10238426	F019824	N/A	MDKYITDNFTGSIDDLLNHCTNLDLDKVEAQVKVEEKKACIQIIMKEASCDELEANIIYNEILLTETKTTIDKMVADGLLYVSGHNEDGEPLFQLTELGKAVRNELGNNK