NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1023425

Scaffold Ga0209296_1023425


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1023425 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3488
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024717Metagenome204Y
F034061Metagenome175N
F048156Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10234252F034061N/AMCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDVALGTNKYAGIRVTIDPNTESFLNFYLSNFKIDIYTMATPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGHCFDCSGNVRGAHICPFVDAVGIELTVSGDDVISSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSVNIGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
Ga0209296_10234253F024717N/AMATPKEISGRIDALFSEWSGGFTPLYFAVLDMRREMYIRIFGTGTSGGTNTAGQTLPTKPYTPAYAAIKAKNGRPPLELTGFLKRSFATDQTSVFAQGFGVAIYIQADESGKVAGLQKLYGPIFQSTSEEEDRMLQLHADLLVEQISNQISKP
Ga0209296_10234254F048156N/AMNLLKTIIERLNQRVEVANIFDKQFGLCELNANGNDKAWVHYIGNGQAEVVTNFDAKQGTLFWAKRGKVTVVKTDAYKMSGCKQLYVTSFPLTAYAVVRKSHLPCDGDDAQDWLASRIYKLTSGTDPLFKQNIGVINYEVIPSGYINEIKTLTANYEWACVTVDFDIQVITTTEDGCYDICATGDIPLPDFQPCTPCLTEVAVDGVTIIGNGTAADPLSAI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.