Scaffold Ga0209296_1017245

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1017245
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4182
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031492	Metagenome	182	Y
F032578	Metagenome	179	N
F035297	Metagenome	172	N
F048305	Metagenome	148	N
F049615	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10172451	F035297	N/A	PLTDRIKAGWIIAFTMIGWMFFLLPMTGEDIPEGHPTPVSQQAWITWIIINFVLLICVHLLISKEHRAMKRGIKTMKRVELARQMHPTRKHD
Ga0209296_101724510	F031492	GGAG	MSQYNKGDKVIIDDESGVIESVLVGAEGTLYDVRYGHTFMIATDVPEEDIYPWMADEQ
Ga0209296_10172455	F032578	N/A	MIDPIEGRTYDLRNEDIQAINYIKTQIQSLDHERRNEYATLLIDAQSTKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITNDTYTKAGEALGHLNATQAEQFAQICYGITADQVTIQYIPEQNSFRVQEVRQ
Ga0209296_10172458	F049615	AGGAG	MTPDNTNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMHELDLCRATLTQAHSDISRLRVWLAQGAEL
Ga0209296_10172459	F048305	AGG	MGMSDYDMHIKGQDFRISELINETAMEQLQTRKLEIQVVELCSEIARLNSHIQTLENTLSAMSGELHALRMETQ