Scaffold Ga0209296_1014161

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1014161
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4689
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F010599	Metagenome / Metatranscriptome	301	Y
F017301	Metagenome / Metatranscriptome	241	Y
F032149	Metagenome	180	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10141613	F017301	AGGAGG	MNNILNDKTKAILASYGRSVLGSVLALYMAGVTDPKDLWAALVAALAPVALRALNPNDLAFGVLPDTGAVSDALSKIVPAKSAPKKKAAKKK
Ga0209296_10141616	F010599	AGG	MVIMEMIFLVFFATLSFSFALSMWATFNKLKKSNLLLAELFIKNRALEELNYQANKGINMSDDTIHKENFIKFLSDSRDWAFDYIEKSQKTIEEVSKELNDVGLNRYSEKLIKLLPEKK
Ga0209296_10141617	F032149	GGAG	MKKKIIILILSAISILVAISLFFASRLSQLSDLDLFDIEKDDF
Ga0209296_10141618	F045545	GAGG	MIKQIALFFICKFKSHNLVDAGSCPFTGKNYAACLRCGATITK
Ga0209296_10141619	F003688	GGA	MYTDTMRKAVHSITPPKGFGVTIIDNEHFLTVKLDEKKFLHMGHDDKISALQYVVKLKKALEYCGAIVLVTREAIK