Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1013960 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1013960 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4726
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4726

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10139605	F000258	GGAGG	MTDYKADIMLDLRKYLWNELKANDIFTPTDYYSDNIGQEIVPIIPIQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISKKFKFFSIFVADISPTAPSEELVGFLSTDVILEVKYARHLDSTGRFL
Ga0209296_10139606	F035307	GGA	LDNSSLLVTAASGLQKGMAGTSGRVLRDSTVAQISAAIYYQAQVVSKITTNKQFQKKFQSVIFKQIEEDFGLYVDSQSRMNPKSLHHVYEWKKAGNKSARLFKLKVLSTDGLSFKITSDFLPSKSAVPNEFGKRRHVFINKASVMEAGMPLVIRPKFAERLVFETSTGVVYMPKGASVAVTRPGGGKATGRFQIAYAQFFTGNLVNTAIKRSGFQQIFNSSLTKSMRLPSDVRKVKYSFNANTLNMNAESAIASAFGGAV
Ga0209296_10139607	F056615	N/A	MYDLVDSVMPMFMDVYKQFDLQDQDTGAIKKEWQFDRTVPCSAKGNISNSSLSSPGDKQTFSNRYKNEETLQIRTSDKVTLREKITNIRDNEGTVIWEELNFPSNTPTVFEVIGMTPMTDPLGGVVAYNATVKRSENQTIGQ
Ga0209296_10139608	F058150	N/A	MEILVGSNSPVTHKVFWQGQLTDSDSLPVVRLYDITEDPAISPPINPGTILATLTAVKSEADAGTYIVYIPVQYTNRQRQLRLNWSYTVGSVSTEKNHKIYVQTPYTDLSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLVNTLTNVNNWNYSTIISESGFGIRINRANMLDNTVYTANGMVPPPMNDTWNGVFANGLTYRVQGKFGWEEVPDEVDLACIELMKDYFSKDKIWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1013960

Overview

Ecosystem & Geography

Associated Families

Sequences