Scaffold Ga0209296_1013704

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1013704
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4781
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F004431	Metagenome / Metatranscriptome	438	Y
F005348	Metagenome / Metatranscriptome	403	Y
F018352	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101370416	F004431	AGTAGG	MTITYSLWDGMQLLGVDFKASSADEMNTVVAELQKVSKNVVAHMRKVEVA
Ga0209296_10137042	F003393	GAGG	MIDLENDDTIQIVDYVKVDILNAGQLEIDDCILVGDEVVSIVDIVSLRDGYTLELVNDFGEREIIEVGEYDQFDLMMLQ
Ga0209296_10137044	F000808	AGGAG	MEYNYSLTTSYDGKLIHTLRVSDMLEAVNAWDKCVDYGTAKEYATYNLSDLTGKMYTKTFYANGEVVIK
Ga0209296_10137045	F018352	AGGA	MGKFKDTLMEILAHDDCYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFKTKEN
Ga0209296_10137048	F005348	AGG	MINSVMAFNCDECNGQGLIFWGNDLDYDVEKCDCNNFALGNLFTSGEAN