Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1013272 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1013272 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4864
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4864

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F006846	Metagenome / Metatranscriptome	363	Y
F013414	Metagenome / Metatranscriptome	271	Y
F020166	Metagenome / Metatranscriptome	225	Y
F026195	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101327211	F026195	N/A	MGILDNLEAYIELEDKPQPGYSTGKWSDDDDVHPTITPVFGPNR
Ga0209296_101327213	F006846	AGGA	MITDLVEKYLMRPKRLREAIQAVVRDNDELLRLIKEAENEEPTNLTWSEGDTWYGWTYNSNTKRYYFDDIGNTSLMGLWKDQWLREADDNNG
Ga0209296_101327214	F020166	N/A	MKEPKIMKMDWRSLGYWPVYKDGKLTWEKDTDNDN
Ga0209296_10132722	F000263	AGG	MNAEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAEGRLDTLVELYKLTYDLSFAIGKKEGQKV
Ga0209296_10132723	F001019	AGG	MTYEPSLEIVEVEYSCSPGGVDLFEVYDKSDIPLGMPIYETEDLTKAVLFCYNLGKDFTVRTLAEWNERELVYEA
Ga0209296_10132726	F013414	AGGCGG	MKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTESGIYNSGLTSEGLFLANELNETLNRLIKTYKWENIKLPVDPDKIIRRLPKVETQSYRHSWLHDTDTRTHVTIDHPFI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1013272

Overview

Ecosystem & Geography

Associated Families

Sequences