Scaffold Ga0209296_1013117

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1013117
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4896
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014358	Metagenome	263	Y
F034071	Metagenome / Metatranscriptome	175	N
F038590	Metagenome / Metatranscriptome	165	Y
F049487	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101311710	F014358	GGAGG	MFDWKECSDCKDEIPTERYQAFCIFCEQDRERSAGEERSSWCVVQEYGKGNYQLVTPASARTTLKQTNQKELRG
Ga0209296_101311714	F034071	AGG	MSTQVISSPAIDTGILDIARSALVETAVKTGKVIIDYSSAISSIFDVKDVNGKVITKWYDLEGKDKKGVKAERALFANTLMDRDAKFIKSIDKDGKRTPTATVDTYWMRVKEASGYVPSGRVTGSNDVDTKTATELKTMINRILKSEEDGQECHASMIVNLLKEAHIVLTGEAYNAKK
Ga0209296_10131172	F049487	GAGG	VLRRKKKFMLLRGKMGNFIVVERRWYDFAGISRVQGKHKMWWIAAQDDDSEMLNAMAGLTDKHVKMGVYHEQDGVVTRRE
Ga0209296_10131175	F038590	AGG	MTIRPRHVKVDRLSKRVTQTDYLQMLGEAMKFARVEESKPVLNARELPIQTKREVK