NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1013027

Scaffold Ga0209296_1013027


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1013027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4914
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010232Metagenome / Metatranscriptome306Y
F010612Metagenome301Y
F015719Metagenome / Metatranscriptome252Y
F051888Metagenome / Metatranscriptome143Y
F056557Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_101302710F056557AGGAGMYLDTGTMIGIMIALIASILTIGYSIYIIKTQNEIIQRMSDISATRRKMGR
Ga0209296_101302711F051888N/AMTSFALSSSTQSFSCSHENPATQLDTRDEYCAECNLLQEGSSVEHALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEYLDGVYDITNRLPSWLYLGKHVFPMFKQDELNAYLALPCTDTICILCHLQVNRFVGCQQCITPSQSLYNEISRVMHL
Ga0209296_10130272F015719AGGAGMTMYYTEVDGIEPTVSTQVGGIKYTFTNESLTKLIEEKEQLKVELVQLERKFRSARFDVREFFQSRYETDSNEIVCEVDDVNELLISLETEALTRSWSATVTITATVTGIEAPNAEAAQEILDDAFEVNLTIDGDVWVDDVSVESVHAES
Ga0209296_10130277F010612GAGGMLDEDIPVWEHTVWILAKVRCRTTHVDIYTAGDEALDDLNEWHILEFDKGVKHSQEIVRV
Ga0209296_10130279F010232AGGMRSREELLKIKEAFAFAMLDLLDVYDELLATGRIYVADEPTINDLAKNQDESNA
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Institute for Fundamental Biomedical Research
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