NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1012883

Scaffold Ga0209296_1012883


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1012883 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4947
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009140Metagenome / Metatranscriptome322Y
F012211Metagenome / Metatranscriptome282N
F032955Metagenome178Y
F034109Metagenome175N
F046258Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10128831F046258GGAGMKLLTIAIKRVLSYFEIVTLQPSLPILLRDKTPARMTLPTLSITDPKFVYKNASCTDITHTFQKAKDERLQRLRNDADDNRKQDQGTEQQMPIKKLRRVHG
Ga0209296_10128832F012211AGGAGMPTDEERFNYECYAIVQELDPEDISDAIDDSVALVEAIKANNAEDVAAIVMHRVELKVCRRAELRVFDVVKTPWIDDIEELQHYRNLRIERVQKALDERKITAAKMDAPFKEMFDE
Ga0209296_10128833F009140GGAGMRLNLTHRTLLKRLSNGPRTMLEMTHSHTDNNAVSYHYAKYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEIYDGKELRRNVQRRGCYDFLKYPSRFGDNQIYRV
Ga0209296_10128836F032955N/AMNKNQAHEILEQRKQGFAVSQYFVNRALVVSGDLGMACLPCQATWVEGSGMAQGEGTGVMPDSLMAWNKNRFDEPHESPI
Ga0209296_10128838F034109GAGMANKINPNRTQTDFKLDLSPEQRAILELIGVGNMTQGLKVAIDQAGHFYNCGLDPEMNLNYVGLITTLPNQDDD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.